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yeye 2015-02-16 07:56:27
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yhshin@insilicogen.com 2016-06-10 07:12:35

Structured data

Category: Database

European Bioinformatics Institute (EBI, EMBL-EBI)
Analysis tool servies
Resources at the EMBL-EBI
References
Incoming Links
1. Related Bioinformaticses (Bioinformatics 0)
Suggested Pages

European Bioinformatics Institute (EBI, EMBL-EBI) #

European Molecular Biology Laboratory (EMBL)의 산하기관으로 1994년 설립되었고, 현재 영국의 Hinxton에 위치하고 있다. 500명 이상의 박사과정, 포스닥, 소프트웨어개발자를 포함한 생물정보 관련 전문가들이 소속되어있다. EBI는 Clustal Omega와 MUSCLE과 같은 생물학 분석툴과 UniProt과 같은 생물학 데이터베이스, 그리고 데이터베이스를 검색할 수있는 웹 서비스를 제공하고있다.

Analysis tool servies #

서열 유사검색 (e.g. BLAST)과 다중서열정렬(e.g. Clustal Omega and MUSCLE), 쌍서열정렬, 단백질 기능 분석(e.g. InterProScan and Phobius) 서비스를 제공한다.

Topic	Web Services
Data retrieval	Dbfetch, WSDbfetch
Identifier mapping	PICR, UniProt.org ID Mapping
Multi-database search	EB-eye
Multiple sequence alignment	Clustal Omega, ClustalW2, DbClustal, Kalign, MAFFT, MUSCLE, MView, PRANK, T-Coffee
Pairwise sequence alignment	Lalign, EMBOSS tools: matcher, needle, stretcher and water, and the Wise2 tools: GeneWise, PromoterWise and Wise2DBA
Phylogeny	ClustalW2 Phylogeny
Protein functional analysis	InterProScan, Phobius, RADAR
Sequence format conversion	EMBOSS seqret, MView, Readseq
Sequence operations	CENSOR, Seqcksum
Sequence similarity search	FASTA, FASTM, NCBI BLAST, PSI-BLAST, PSI-Search, WU-BLAST
Sequence statistics	SAPS and the EMBOSS tools: pepinfo, pepstats and pepwindow
Sequence translation	EMBOSS tools: backtransambig, backtranseq, sixpack and transeq
Structure analysis	DaliLite, MaxSprout
Text mining	Whatizit

출처: Nucleic Acids Res. 2013 Jul; 41(Web Server issue): W597–W600.

Resources at the EMBL-EBI #

EBI가 가지고 있는 public 리소스는 다음과 같다.

#	리소스명	설명
1	ArrayExpress	archive of gene expression experiments
2	BioModels Database	a database of computational models relevant to the life sciences
3	ChEBI	database and ontology of molecular entities
4	ENA	resource of nucleotide sequencing information
5	Ensembl project	genome databases for vertebrates and other eukaryotic species (joint with Wellcome Trust Sanger Institute)
6	Europe PubMed Central	database offering free access to collection of biomedical research literature
7	EFO	ontology of experimental variables for biomedical data
8	Expression Atlas	database of summary information on which genes are expressed under which conditions
9	Gene ontology	ontology of gene functions and process
10	InterPro	database of protein functional domains and processes
11	Protein Data Bank in Europe	European resource for the collection, organization and dissemination of data on biological macromolecular structures
12	PRIDE	repository of mass spectrometry (MS) based proteomics
13	UniProt	database of protein sequence and functional information

출처: wikipedia "European Bioinformatics Institute"

References #

Incoming Links #

Related Bioinformaticses (Bioinformatics 0) #

Suggested Pages #

0.403 Swiss-prot
0.116 UniProt 데이터베이스의 구성
0.111 DDBJ
0.045 PIR
0.035 Hyungyong Kim
0.024 Sequence
0.023 AMP
0.022 RNA
0.021 www.uniprot.org
0.020 NCBI
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